STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0568PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: gvi:gll0645 unknown protein. (553 aa)    
Predicted Functional Partners:
Dfer_0569
Putative transmembrane anti-sigma factor; KEGG: smt:Smal_1609 hypothetical protein.
       0.714
Dfer_2684
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: chu:CHU_3715 PKD repeat-containing protein.
  
     0.576
Dfer_0570
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: chu:CHU_0953 RNA polymerase, sigma-E factor; heat shock and oxidative stress; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.548
Dfer_0566
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: chu:CHU_2476 ECF subfamily RNA polymerase sigma-70 factor.
       0.450
Dfer_0567
PFAM: YCII-related; KEGG: chu:CHU_2475 hypothetical protein.
       0.450
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.