STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0597Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_4134 LytTR family two component transcriptional regulator. (242 aa)    
Predicted Functional Partners:
Dfer_0598
PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4133 signal transduction histidine kinase, LytS.
 
   0.954
Dfer_3279
PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4133 signal transduction histidine kinase, LytS.
  
   0.808
Dfer_5299
PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4133 signal transduction histidine kinase, LytS.
  
   0.808
Dfer_1315
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bfs:BF3660 hypothetical protein.
  
   0.805
Dfer_5302
PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_1681 signal transduction histidine kinase, LytS.
  
   0.805
Dfer_0763
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_2031 histidine kinase internal region.
  
   0.804
Dfer_0757
PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4002 signal transduction histidine kinase, LytS.
  
   0.803
Dfer_1005
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: ote:Oter_3912 signal transduction histidine kinase, LytS.
  
   0.803
Dfer_1503
Putative phytochrome sensor protein; PFAM: histidine kinase internal region; Two component regulator propeller; GAF domain protein; Two component regulator three Y domain protein; SMART: GAF domain protein; KEGG: cps:CPS_2607 GGDEF domain-containing protein.
 
  
 0.803
Dfer_2255
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bfs:BF3660 hypothetical protein.
  
   0.803
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.