STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0643Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: chu:CHU_2098 MarR family transcriptional regulator. (151 aa)    
Predicted Functional Partners:
Dfer_0644
PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; KEGG: scl:sce4177 phosphoenolpyruvate synthase.
 
     0.886
Dfer_0816
KEGG: afw:Anae109_1067 hypothetical protein.
  
     0.711
Dfer_2277
KEGG: swi:Swit_3221 hypothetical protein.
  
     0.570
Dfer_1772
PFAM: Endoribonuclease L-PSP; KEGG: fjo:Fjoh_3956 endoribonuclease L-PSP.
  
     0.539
Dfer_0336
KEGG: cak:Caul_4409 hypothetical protein.
  
     0.522
Dfer_1086
KEGG: fjo:Fjoh_2624 hypothetical protein.
  
     0.467
Dfer_1250
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC- type glycine betaine transport system; KEGG: dsy:DSY1657 hypothetical protein.
  
  
 0.450
Dfer_2447
KEGG: mrd:Mrad2831_6398 hypothetical protein.
  
     0.420
Dfer_1384
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_1097 AraC family transcriptional regulator.
  
    0.418
Dfer_3294
PFAM: metallophosphoesterase; KEGG: nph:NP1918A sugar metabolism cluster protein.
  
     0.418
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.