STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0664KEGG: gbm:Gbem_2556 hypothetical protein. (480 aa)    
Predicted Functional Partners:
Dfer_0659
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cpc:Cpar_0887 AAA ATPase central domain protein.
 
 
 0.957
Dfer_0661
KEGG: fjo:Fjoh_3165 hypothetical protein.
 
 
 0.952
Dfer_0663
KEGG: fjo:Fjoh_3165 hypothetical protein.
 
     0.950
Dfer_0665
KEGG: gbm:Gbem_2555 hypothetical protein.
 
     0.946
Dfer_0666
KEGG: gbm:Gbem_2554 hypothetical protein.
 
   
 0.946
Dfer_0667
KEGG: gbm:Gbem_2553 hypothetical protein.
 
   
 0.901
Dfer_0668
PFAM: GPW/gp25 family protein; KEGG: gbm:Gbem_2552 gpW/GP25 family protein.
 
     0.899
Dfer_0670
KEGG: cpc:Cpar_0897 hypothetical protein.
 
     0.896
Dfer_0669
TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: fjo:Fjoh_3155 rhs element Vgr protein.
 
     0.892
Dfer_0672
TIGRFAM: conserved hypothetical protein; KEGG: cpc:Cpar_0899 conserved hypothetical phage tail protein.
 
   
 0.874
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.