STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0700KEGG: sth:STH2945 hypothetical protein. (428 aa)    
Predicted Functional Partners:
Dfer_1787
PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; KEGG: ote:Oter_2870 cytochrome c oxidase mono-heme subunit/FixO.
 
 
 0.994
Dfer_5323
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; KEGG: chu:CHU_1138 cytochrome c oxidase, cbb3-type; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.960
Dfer_0699
KEGG: mag:amb3576 hypothetical protein.
 
     0.952
Dfer_0698
Hemerythrin HHE cation binding domain protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
     0.902
Dfer_0690
KEGG: gfo:GFO_1400 membrane protein.
 
 
 0.884
Dfer_0692
KEGG: sul:SYO3AOP1_0446 cytochrome c class I.
 
 
 0.884
Dfer_5320
KEGG: chu:CHU_1142 hypothetical protein.
  
 
 0.873
Dfer_0701
PFAM: protein of unknown function DUF59; KEGG: gka:GK0753 hypothetical protein.
 
     0.855
Dfer_4177
KEGG: ote:Oter_0487 hypothetical protein.
  
 
 0.847
Dfer_0697
KEGG: gfo:GFO_1406 nitrous-oxide metabolic protein NosY.
 
     0.826
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.