STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0718PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: fjo:Fjoh_4242 hypothetical protein. (1783 aa)    
Predicted Functional Partners:
Dfer_5691
PFAM: PKD domain containing protein; KEGG: chu:CHU_2603 mannosidase-related.
  
 
   0.598
Dfer_5660
KEGG: fjo:Fjoh_4789 hypothetical protein.
  
     0.585
Dfer_0719
Hypothetical protein.
  
    0.536
Dfer_0707
PFAM: regulatory protein TetR; KEGG: fps:FP0423 TetR family transcriptional regulator.
  
 
   0.517
Dfer_1610
PFAM: Methyltransferase type 11; Cyclopropane-fatty- acyl-phospholipid synthase; Methyltransferase type 12; KEGG: hne:HNE_0921 hypothetical protein.
  
    0.511
Dfer_0537
KEGG: fjo:Fjoh_3952 hypothetical protein.
   
 
0.506
Dfer_3542
PFAM: alpha-2-macroglobulin domain protein; alpha-2- macroglobulin domain protein 2; KEGG: chu:CHU_1193 hypothetical protein.
  
     0.506
Dfer_4830
PFAM: TonB-dependent receptor plug; KEGG: bth:BT_1460 hypothetical protein.
  
     0.494
Dfer_2367
KEGG: bth:BT_1460 hypothetical protein.
  
     0.477
Dfer_3080
PFAM: type III restriction protein res subunit; KEGG: chu:CHU_1556 DNA helicase.
  
     0.450
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.