STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0726Hypothetical protein; KEGG: dol:Dole_1787 polymorphic outer membrane protein. (1263 aa)    
Predicted Functional Partners:
Dfer_3308
KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related.
  
     0.693
Dfer_2409
KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related.
  
     0.685
Dfer_5468
KEGG: aba:Acid345_2296 hypothetical protein.
  
   0.683
Dfer_0727
KEGG: sus:Acid_2174 hypothetical protein.
       0.678
Dfer_0787
KEGG: aba:Acid345_2296 hypothetical protein.
  
 
   0.662
Dfer_1579
KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related.
  
     0.655
Dfer_0728
KEGG: chu:CHU_2867 cytochrome c-related protein.
       0.498
Dfer_0721
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_4738 histidine kinase.
  
     0.473
Dfer_0725
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two component regulator three Y domain protein; Two component regulator propeller; KEGG: bth:BT_4663 two-component system sensor histidine kinase/response.
       0.448
Dfer_2135
KEGG: fjo:Fjoh_4089 hypothetical protein.
  
 
   0.422
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.