STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0759KEGG: mxa:MXAN_1569 putative cytochrome c. (296 aa)    
Predicted Functional Partners:
Dfer_5323
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; KEGG: chu:CHU_1138 cytochrome c oxidase, cbb3-type; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.979
Dfer_3476
KEGG: chu:CHU_2212 molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.910
Dfer_2187
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] domain protein; KEGG: chu:CHU_2065 oxidoreductase.
  
 
 0.604
Dfer_4136
PFAM: Rieske [2Fe-2S] domain protein; KEGG: mjl:Mjls_3579 Rieske (2Fe-2S) domain- containing protein.
  
 
 0.592
Dfer_1787
PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; KEGG: ote:Oter_2870 cytochrome c oxidase mono-heme subunit/FixO.
  
 
 0.550
Dfer_3471
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.539
Dfer_3470
PFAM: cytochrome c oxidase subunit I; KEGG: chu:CHU_2206 cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.533
Dfer_0700
KEGG: sth:STH2945 hypothetical protein.
  
 
 0.525
Dfer_5320
KEGG: chu:CHU_1142 hypothetical protein.
 
 
 0.520
Dfer_3466
PFAM: cytochrome c oxidase subunit III; KEGG: chu:CHU_2202 cytochrome c oxidase, subunit III.
   
 
 0.515
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.