STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0803PFAM: regulatory protein TetR; KEGG: fjo:Fjoh_2965 TetR family transcriptional regulator. (174 aa)    
Predicted Functional Partners:
Dfer_0802
PFAM: protein of unknown function DUF1348; KEGG: fjo:Fjoh_2964 hypothetical protein.
 
     0.784
Dfer_2110
PFAM: regulatory protein TetR; KEGG: chu:CHU_2862 TetR family transcriptional regulator.
  
     0.547
Dfer_0804
Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_3229 LytTR family two component transcriptional regulator.
       0.487
Dfer_0805
PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_3230 signal transduction histidine kinase, LytS.
       0.487
Dfer_1854
KEGG: sal:Sala_0365 (acyl-carrier protein) phosphodiesterase.
  
     0.404
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.