STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0809KEGG: gfo:GFO_2143 membrane or secreted protein. (850 aa)    
Predicted Functional Partners:
Dfer_0810
PFAM: RagB/SusD domain protein; KEGG: bfs:BF0537 putative outer membrane protein.
 
     0.661
Dfer_0811
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfs:BF0536 putative outer membrane protein.
 
     0.642
Dfer_0812
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gfo:GFO_1697 two-component system sensor histidine kinase/response regulator hybrid.
 
     0.614
Dfer_2533
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: fjo:Fjoh_3863 TonB-dependent receptor.
  
     0.436
Dfer_1943
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pmj:P9211_04271 ubiquinone/menaquinone biosynthesis methyltransferase.
  
     0.427
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.