STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0853KEGG: fal:FRAAL1810 putative oxygenase subunit protein. (417 aa)    
Predicted Functional Partners:
Dfer_2324
PFAM: monooxygenase FAD-binding; KEGG: xau:Xaut_2227 monooxygenase FAD-binding.
 
  
 0.619
Dfer_1240
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: chu:CHU_1359 electron transfer flavoprotein, beta subunit.
  
 
 0.598
Dfer_0852
PFAM: beta-lactamase; KEGG: dsh:Dshi_0676 beta-lactamase.
       0.594
Dfer_0854
PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; serine/threonine protein kinase; GAF domain protein; KEGG: pth:PTH_0142 hypothetical protein.
 
     0.578
Dfer_0851
KEGG: gvi:glr3047 hypothetical protein.
       0.509
Dfer_1241
PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: chu:CHU_1360 electron transfer flavoprotein, alpha subunit.
  
 
 0.497
Dfer_1081
KEGG: bba:Bd3635 hypothetical protein.
  
     0.477
Dfer_3404
PFAM: AMP-dependent synthetase and ligase; KEGG: npu:Npun_F3356 AMP-dependent synthetase and ligase.
 
   
 0.442
Dfer_2037
PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: chu:CHU_3794 naringenin-chalcone synthase.
  
  
 0.434
Dfer_2040
KEGG: chu:CHU_1814 hypothetical protein.
  
     0.425
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.