STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_0985KEGG: pdi:BDI_2527 hypothetical protein. (1052 aa)    
Predicted Functional Partners:
Dfer_0684
KEGG: fjo:Fjoh_3332 ABC-type transport system involved in multi-copper enzyme maturation permease component-like protein.
  
     0.561
Dfer_0683
KEGG: fjo:Fjoh_3333 hypothetical protein.
  
     0.535
Dfer_3063
KEGG: pdi:BDI_2811 hypothetical protein.
  
     0.495
Dfer_0321
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: fjo:Fjoh_4951 TonB-dependent receptor, plug.
  
   0.492
Dfer_0984
KEGG: gfo:GFO_3153 conserved hypothetical protein, membrane.
       0.440
Dfer_2232
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4646 RagB/SusD domain-containing protein.
  
     0.429
Dfer_4458
KEGG: nmu:Nmul_A0462 hypothetical protein.
  
     0.413
Dfer_2207
PFAM: TonB-dependent receptor plug; KEGG: bvu:BVU_0389 hypothetical protein.
  
     0.403
Dfer_3124
PFAM: protein of unknown function DUF450; KEGG: fps:FP0713 hypothetical protein.
  
     0.401
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.