STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1025PFAM: peptidase M19 renal dipeptidase; KEGG: fjo:Fjoh_0672 peptidase M19, renal dipeptidase. (356 aa)    
Predicted Functional Partners:
Dfer_1026
PFAM: alanine racemase domain protein; KEGG: pdi:BDI_1328 D-threonine aldolase, metal- activated pyridoxal enzyme.
 
     0.881
Dfer_1027
PFAM: Endoribonuclease L-PSP; KEGG: fjo:Fjoh_0668 endoribonuclease L-PSP.
 
     0.788
Dfer_4947
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3678 hypothetical protein.
  
     0.520
Dfer_4950
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3284 hypothetical protein.
  
     0.449
Dfer_1459
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3678 hypothetical protein.
  
     0.448
Dfer_5259
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2333 hypothetical protein.
  
     0.439
Dfer_1024
Hypothetical protein.
       0.425
Dfer_1554
PFAM: Endoribonuclease L-PSP; KEGG: xau:Xaut_3793 endoribonuclease L-PSP.
 
     0.421
Dfer_1028
TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pdi:BDI_1331 H+/gluconate symporter and related permease.
 
     0.403
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.