STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1049KEGG: chu:CHU_1541 hypothetical protein. (308 aa)    
Predicted Functional Partners:
Dfer_1051
Hypothetical protein; KEGG: chu:CHU_1539 integral outer membrane protein.
 
 
 0.907
Dfer_1052
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Sel1 domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: chu:CHU_1538 TPR repeat-containing protein.
 
  
 0.845
Dfer_3384
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: fps:FP0543 putative biopolymer transporter.
 
 
 0.837
Dfer_1048
TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: bfs:BF2850 putative folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
       0.807
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
    0.775
Dfer_2372
KEGG: chu:CHU_1803 hypothetical protein.
  
 
   0.755
Dfer_3665
KEGG: gfo:GFO_3249 hypothetical protein.
  
  
 0.748
Dfer_4377
KEGG: chu:CHU_3459 hypothetical protein.
  
     0.748
Dfer_2010
KEGG: chu:CHU_3459 hypothetical protein.
  
     0.739
Dfer_1030
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_1681 hypothetical protein.
  
     0.724
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.