STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1062KEGG: fjo:Fjoh_1574 hypothetical protein. (233 aa)    
Predicted Functional Partners:
Dfer_1063
KEGG: fjo:Fjoh_1573 hypothetical protein.
 
     0.914
Dfer_0549
Transcriptional regulator, AraC family; KEGG: amr:AM1_4991 methylated DNA-protein cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type.
      0.637
Dfer_5450
PFAM: Cupin 2 conserved barrel domain protein; KEGG: bph:Bphy_6639 cupin 2 domain-containing protein.
  
     0.504
Dfer_1061
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: chu:CHU_2049 ABC transporter, ATP- binding/permease.
       0.443
Dfer_2285
PFAM: Cupin 2 conserved barrel domain protein; KEGG: bfs:BF3291 hypothetical protein.
  
     0.408
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.