STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1069KEGG: chu:CHU_1636 hypothetical protein. (361 aa)    
Predicted Functional Partners:
Dfer_0317
KEGG: sus:Acid_1898 hypothetical protein.
  
     0.682
Dfer_3771
PFAM: TonB-dependent receptor plug; KEGG: bth:BT_4324 hypothetical protein.
  
     0.661
Dfer_4404
KEGG: bfs:BF0286 hypothetical protein.
  
     0.651
Dfer_5480
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: chu:CHU_1913 anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
     0.616
Dfer_1068
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: chu:CHU_2215 cytidine/deoxycytidylate deaminase (dCMP deaminase).
       0.554
Dfer_4928
KEGG: chu:CHU_2442 hypothetical protein.
  
     0.554
Dfer_2585
PFAM: Smr protein/MutS2; KEGG: chu:CHU_1963 hypothetical protein.
  
     0.541
Dfer_3610
Hypothetical protein; KEGG: sul:SYO3AOP1_0718 cytochrome c class I.
  
     0.526
Dfer_4400
KEGG: pdi:BDI_1509 hypothetical protein.
  
     0.469
Dfer_1572
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3864 RagB/SusD domain-containing protein.
  
     0.417
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.