STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1081KEGG: bba:Bd3635 hypothetical protein. (214 aa)    
Predicted Functional Partners:
Dfer_1553
KEGG: rha:RHA1_ro01158 hypothetical protein.
 
     0.502
Dfer_1082
PFAM: phosphate-selective porin O and P; KEGG: cts:Ctha_0896 phosphate-selective porin O and P.
       0.501
Dfer_1725
PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: bvu:BVU_0392 glycoside hydrolase family protein.
  
     0.481
Dfer_1712
KEGG: afw:Anae109_1621 hypothetical protein.
  
     0.478
Dfer_0853
KEGG: fal:FRAAL1810 putative oxygenase subunit protein.
  
     0.477
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.