STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1082PFAM: phosphate-selective porin O and P; KEGG: cts:Ctha_0896 phosphate-selective porin O and P. (414 aa)    
Predicted Functional Partners:
Dfer_1610
PFAM: Methyltransferase type 11; Cyclopropane-fatty- acyl-phospholipid synthase; Methyltransferase type 12; KEGG: hne:HNE_0921 hypothetical protein.
  
     0.580
Dfer_3838
PFAM: Phytanoyl-CoA dioxygenase; KEGG: ppw:PputW619_3748 hypothetical protein.
  
     0.572
Dfer_3550
SMART: Dystroglycan-type cadherin domain protein; KEGG: gur:Gura_2550 putative outer membrane adhesin like protein.
  
     0.565
Dfer_5596
PFAM: major facilitator superfamily MFS_1; KEGG: mem:Memar_2034 major facilitator transporter.
  
     0.533
Dfer_3275
KEGG: mxa:MXAN_1648 hypothetical protein.
  
     0.513
Dfer_1081
KEGG: bba:Bd3635 hypothetical protein.
       0.501
Dfer_1619
PFAM: RagB/SusD domain protein; KEGG: chu:CHU_0547 hypothetical protein.
  
     0.451
Dfer_0068
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: aas:Aasi_0982 hypothetical protein.
  
     0.426
Dfer_3080
PFAM: type III restriction protein res subunit; KEGG: chu:CHU_1556 DNA helicase.
  
     0.418
Dfer_1617
KEGG: chu:CHU_0549 hypothetical protein.
  
     0.417
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.