STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1152PFAM: LmbE family protein; KEGG: sus:Acid_6225 LmbE family protein. (298 aa)    
Predicted Functional Partners:
Dfer_3778
KEGG: ote:Oter_2210 hypothetical protein.
  
     0.698
Dfer_3262
KEGG: art:Arth_3330 hypothetical protein.
  
     0.606
Dfer_3499
PFAM: protein of unknown function DUF1080; KEGG: rba:RB10138 putative membrane lipoprotein.
  
    0.606
Dfer_4491
KEGG: aau:AAur_2666 hypothetical protein.
 
     0.526
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
       0.498
Dfer_1406
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_3710 xylose isomerase domain- containing protein.
  
     0.496
Dfer_5254
KEGG: rca:Rcas_3853 hypothetical protein.
 
     0.472
Dfer_2495
KEGG: sus:Acid_4741 hypothetical protein.
 
     0.452
Dfer_0481
KEGG: sus:Acid_6148 selenocysteine synthase (seryl- tRNASer selenium transferase)-like protein.
 
     0.449
Dfer_4493
PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase.
  
    0.421
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.