STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1237PFAM: oxidoreductase domain protein; KEGG: sus:Acid_3799 oxidoreductase domain- containing protein. (434 aa)    
Predicted Functional Partners:
Dfer_5057
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: tex:Teth514_0993 oxidoreductase domain- containing protein.
  
     0.719
Dfer_1236
PFAM: Acetyl xylan esterase; KEGG: ote:Oter_2302 acetyl xylan esterase.
       0.686
Dfer_4410
KEGG: chu:CHU_3456 hypothetical protein.
  
    0.527
Dfer_1167
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tex:Teth514_0991 xylose isomerase domain- containing protein.
  
    0.517
Dfer_4438
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rca:Rcas_2755 oxidoreductase domain- containing protein.
 
     0.512
Dfer_4551
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_2424 FG-GAP repeat-containing protein.
  
     0.494
Dfer_3436
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_1903 hypothetical protein.
  
    0.491
Dfer_0469
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12844 hypothetical protein.
 
    0.488
Dfer_2872
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_0027 xylose isomerase domain- containing protein.
  
    0.488
Dfer_5403
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1827 hypothetical protein.
  
     0.485
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.