Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Dfer_1237PFAM: oxidoreductase domain protein; KEGG: sus:Acid_3799 oxidoreductase domain- containing protein. (434 aa)    
Predicted Functional Partners:
Dfer_5057
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: tex:Teth514_0993 oxidoreductase domain- containing protein.
  
     0.719
Dfer_1236
PFAM: Acetyl xylan esterase; KEGG: ote:Oter_2302 acetyl xylan esterase.
       0.686
Dfer_4410
KEGG: chu:CHU_3456 hypothetical protein.
  
    0.529
Dfer_4438
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rca:Rcas_2755 oxidoreductase domain- containing protein.
 
     0.516
Dfer_4551
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_2424 FG-GAP repeat-containing protein.
  
     0.494
Dfer_5403
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1827 hypothetical protein.
  
     0.485
Dfer_1235
PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: cpr:CPR_2299 ribosomal large subunit pseudouridine synthase F; Belongs to the pseudouridine synthase RsuA family.
       0.464
Dfer_4583
PFAM: protein of unknown function DUF1080; KEGG: gfo:GFO_1022 conserved hypothetical protein, secreted.
 
     0.457
Dfer_5258
PFAM: oxidoreductase domain protein; KEGG: art:Arth_3384 oxidoreductase domain protein.
  
     0.452
Dfer_4032
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH0710 hypothetical protein.
  
     0.450
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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