STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1243PFAM: protein of unknown function DUF214; KEGG: aas:Aasi_0390 hypothetical protein; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (292 aa)    
Predicted Functional Partners:
Dfer_5046
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aas:Aasi_1353 hypothetical protein.
 
 
 0.982
Dfer_3774
PFAM: Peptidase M23; KEGG: chu:CHU_0023 M23/M37 family peptidase.
 
 
 
 0.968
Dfer_1244
KEGG: aas:Aasi_0389 hypothetical protein.
 
     0.707
uppP
Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
    0.671
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.580
Dfer_1247
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: chu:CHU_0947 bifunctional protein: riboflavin kinase; FAD synthetase; Belongs to the ribF family.
       0.577
Dfer_1242
PFAM: protein of unknown function DUF151; KEGG: chu:CHU_1361 hypothetical protein.
       0.546
Dfer_2890
PFAM: DivIVA family protein; KEGG: chu:CHU_0760 cell division initiation protein.
  
  
 0.446
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
  
 0.445
Dfer_2925
PFAM: PASTA domain containing protein; SMART: PASTA domain containing protein; KEGG: aas:Aasi_1368 hypothetical protein.
  
   
 0.414
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.