STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1376KEGG: gfo:GFO_3198 conserved hypothetical protein, membrane or secreted. (575 aa)    
Predicted Functional Partners:
Dfer_1379
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2468 hypothetical protein.
 
    0.781
Dfer_1377
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sea:SeAg_B1541 mandelate racemase/muconate lactonizing enzyme, C-domain protein.
       0.727
Dfer_1380
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_2469 hypothetical protein.
 
     0.717
Dfer_2810
KEGG: dol:Dole_0977 hypothetical protein.
 
     0.679
Dfer_2226
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2468 hypothetical protein.
  
    0.640
Dfer_2812
PFAM: Carbamoyltransferase; KEGG: ter:Tery_1703 carbamoyltransferase.
 
     0.632
Dfer_1836
PFAM: tyrosinase; KEGG: dac:Daci_1610 tyrosinase.
  
     0.594
Dfer_0535
KEGG: spl:Spea_1237 hypothetical protein.
  
    0.573
Dfer_0322
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1712 SusD/RagB family protein.
  
    0.568
Dfer_0321
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: fjo:Fjoh_4951 TonB-dependent receptor, plug.
 
     0.567
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.