STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1573PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4951 TonB-dependent receptor, plug. (1041 aa)    
Predicted Functional Partners:
Dfer_1572
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3864 RagB/SusD domain-containing protein.
 
 
   0.928
Dfer_1571
KEGG: fjo:Fjoh_4949 hypothetical protein.
 
     0.897
Dfer_2532
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3864 RagB/SusD domain-containing protein.
 
 
   0.798
Dfer_1564
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_0601 hypothetical protein.
 
 
   0.784
Dfer_1765
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4646 RagB/SusD domain-containing protein.
  
 
   0.776
Dfer_5331
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_1908 hypothetical protein.
 
 
   0.776
Dfer_1583
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1712 hypothetical protein.
 
 
   0.761
Dfer_0773
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1712 hypothetical protein.
 
 
   0.758
Dfer_4455
PFAM: RagB/SusD domain protein; KEGG: bfs:BF0340 hypothetical protein.
 
 
   0.753
Dfer_0680
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2413 hypothetical protein.
 
 
   0.733
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.