STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1667PFAM: Ankyrin; SMART: Ankyrin; KEGG: fjo:Fjoh_4067 ankyrin. (509 aa)    
Predicted Functional Partners:
Dfer_1665
PFAM: flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; KEGG: fjo:Fjoh_4069 flavodoxin/nitric oxide synthase.
 
 
 
 0.919
Dfer_1666
KEGG: fjo:Fjoh_4068 hypothetical protein.
 
     0.903
Dfer_1668
KEGG: fjo:Fjoh_4072 hypothetical protein.
 
     0.900
Dfer_1669
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: fjo:Fjoh_4071 TonB-dependent receptor.
 
     0.863
Dfer_2891
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: chu:CHU_0759 WD-40 repeat-containing protein.
    
 0.805
Dfer_1664
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
    0.728
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.652
Dfer_1265
KEGG: cbe:Cbei_2080 hypothetical protein.
    
 0.630
Dfer_1505
KEGG: pfl:PFL_0345 hypothetical protein.
    
 0.630
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
  0.630
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.