STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1706PFAM: PfkB domain protein; KEGG: aba:Acid345_0660 sugar kinase, ribokinase family. (319 aa)    
Predicted Functional Partners:
Dfer_1707
PFAM: sugar isomerase (SIS); KEGG: cak:Caul_0318 sugar isomerase (SIS).
 
  
 0.947
Dfer_1705
KEGG: mta:Moth_0609 fructose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II.
 
  
 0.929
Dfer_1704
RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bfs:BF3583 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.718
Dfer_5701
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein.
 
  
 0.641
Dfer_5695
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rxy:Rxyl_1718 thiamine pyrophosphate enzyme, central region; Belongs to the TPP enzyme family.
 
  
 0.578
Dfer_1708
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; WD40 domain protein beta Propeller; KEGG: cau:Caur_1068 peptidase S9 prolyl oligopeptidase.
 
    0.571
hisA
TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: chu:CHU_1272 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase.
  
    0.557
Dfer_1709
PFAM: protein of unknown function DUF6 transmembrane; KEGG: cak:Caul_0316 hypothetical protein.
       0.489
Dfer_1716
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein ArsR; SMART: regulatory protein DeoR; KEGG: ypb:YPTS_3196 DeoR family transcriptional regulator.
 
    0.467
Dfer_1703
PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR.
       0.441
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.