STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1839KEGG: psp:PSPPH_1192 hypothetical protein. (150 aa)    
Predicted Functional Partners:
Dfer_5573
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
    0.602
Dfer_1250
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC- type glycine betaine transport system; KEGG: dsy:DSY1657 hypothetical protein.
  
    0.558
Dfer_1840
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pdi:BDI_1655 putative nucleoside hydrolase.
       0.505
Dfer_5651
PFAM: CsbD family protein; KEGG: fjo:Fjoh_2319 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.479
Dfer_0259
KEGG: oca:OCAR_4053 hypothetical protein.
  
     0.476
Dfer_3186
KEGG: scl:sce1161 DNA topoisomerase, type I, putative.
 
    0.404
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.