STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1841KEGG: sgr:SGR_1945 hypothetical protein. (571 aa)    
Predicted Functional Partners:
Dfer_1842
KEGG: bfs:BF4251 hypothetical protein.
       0.773
Dfer_0214
KEGG: chu:CHU_1444 DNA processing protein; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; SMART: Helix-hairpin-helix DNA-binding class 1.
  
  
 0.572
Dfer_1843
KEGG: bfr:BF1484 hypothetical protein.
       0.561
Dfer_1844
PFAM: RagB/SusD domain protein; KEGG: bfs:BF4249 putative outer membrane protein.
       0.533
Dfer_1845
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfs:BF4248 putative outer membrane protein.
       0.533
Dfer_3878
KEGG: aas:Aasi_0200 hypothetical protein.
  
  
 0.464
Dfer_4872
DNA uptake protein and related DNA-binding protein-like protein; KEGG: bth:BT_3641 hypothetical protein.
  
  
 0.464
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.