STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1861PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rca:Rcas_2118 short-chain dehydrogenase/reductase SDR. (266 aa)    
Predicted Functional Partners:
Dfer_1956
KEGG: pth:PTH_2358 alpha-acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase; PFAM: alpha-acetolactate decarboxylase.
     
 0.900
Dfer_1860
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rca:Rcas_2117 mandelate racemase/muconate lactonizing protein.
 
     0.857
Dfer_1898
PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: fnu:FN1687 gluconate 5-dehydrogenase.
  
     0.773
Dfer_5255
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aba:Acid345_3509 short-chain dehydrogenase/reductase SDR.
  
     0.773
Dfer_1859
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: ote:Oter_1387 SSS family solute/sodium (Na+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.714
Dfer_4758
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ote:Oter_2880 short-chain dehydrogenase/reductase SDR.
  
     0.649
Dfer_1857
PFAM: RagB/SusD domain protein; KEGG: bfs:BF3257 hypothetical protein.
 
     0.569
Dfer_5585
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: chu:CHU_2064 oxidoreductase (short-chain dehydrogenase); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.551
Dfer_1858
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF3437 hypothetical protein.
 
    0.539
Dfer_1862
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1631 putative transcriptional regulator.
 
     0.516
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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