STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1892TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dth:DICTH_1221 endoribonuclease L-PSP, putative. (127 aa)    
Predicted Functional Partners:
Dfer_1890
PFAM: aminotransferase class-III; KEGG: rca:Rcas_2628 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.762
Dfer_1891
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: reu:Reut_C6280 3-hydroxyacyl-CoA dehydrogenase.
       0.762
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
  0.597
Dfer_1888
PFAM: peptidase M19 renal dipeptidase; KEGG: fjo:Fjoh_0672 peptidase M19, renal dipeptidase.
       0.568
Dfer_1889
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: reu:Reut_C6280 3-hydroxyacyl-CoA dehydrogenase.
       0.561
Dfer_1893
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pca:Pcar_1139 short-chain alcohol dehydrogenase-like protein.
       0.513
Dfer_1895
PFAM: aldo/keto reductase; KEGG: afl:Aflv_0990 predicted oxidoreductase.
  
    0.445
Dfer_1894
PFAM: oxidoreductase domain protein; KEGG: gfo:GFO_2025 oxidoreductase.
       0.443
Dfer_1887
KEGG: rba:RB7871 signal peptide.
       0.429
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.