STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_1970PFAM: protein of unknown function DUF1080; KEGG: sgr:SGR_6942 putative large multi-functional protein. (260 aa)    
Predicted Functional Partners:
Dfer_1971
PFAM: cyclase family protein; KEGG: bha:BH0378 hypothetical protein.
 
    0.760
Dfer_3236
PFAM: cytochrome c class I; KEGG: rba:RB9438 large, multifunctional secreted protein.
 
     0.649
Dfer_2942
KEGG: sus:Acid_7196 hypothetical protein.
  
     0.614
Dfer_2941
KEGG: sus:Acid_7195 hypothetical protein.
  
     0.601
Dfer_0279
TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: rba:RB3919 signal peptide.
  
     0.590
Dfer_4536
TIGRFAM: heme-binding protein; KEGG: rba:RB5806 hypothetical protein.
  
     0.565
Dfer_1100
PFAM: blue (type 1) copper domain protein; KEGG: rba:RB9438 large, multifunctional secreted protein.
 
     0.546
Dfer_1972
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3585 short-chain dehydrogenase/reductase SDR.
       0.544
Dfer_5403
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_1827 hypothetical protein.
  
     0.540
Dfer_1969
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: gfo:GFO_3446 secreted dipeptidyl-peptidase IV family protein.
       0.536
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.