Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dfer_2002PFAM: FAD dependent oxidoreductase; KEGG: fps:FP2255 hypothetical protein. (510 aa)    
Predicted Functional Partners:
Dfer_2001
MCP methyltransferase, CheR-type; PFAM: phospholipid/glycerol acyltransferase; Methyltransferase type 11; MCP methyltransferase CheR- type; Methyltransferase type 12; SMART: phospholipid/glycerol acyltransferase; KEGG: bvu:BVU_1030 putative exporter.
 
  
 0.952
Dfer_2003
PFAM: tryptophan halogenase; monooxygenase FAD- binding; FAD dependent oxidoreductase; KEGG: chu:CHU_2822 flavoprotein/dehydrogenase.
 
  
 0.946
Dfer_1997
PFAM: Beta-ketoacyl synthase; KEGG: fps:FP2284 3-oxoacyl-(acyl-carrier-protein) synthase I; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.883
Dfer_1996
KEGG: fps:FP2283 hypothetical protein.
 
     0.868
Dfer_1995
PFAM: lipid A biosynthesis acyltransferase; KEGG: chu:CHU_2122 acyltransferase.
 
     0.863
Dfer_1985
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: fps:FP2259 dehydratase.
 
     0.860
Dfer_1986
PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pca:Pcar_2658 hypothetical protein.
 
     0.856
Dfer_1991
KEGG: gfo:GFO_1662 hypothetical protein.
 
     0.850
Dfer_1988
KEGG: fjo:Fjoh_1087 3-oxoacyl-(acyl-carrier- protein) synthase-like protein.
 
     0.843
Dfer_1994
KEGG: chu:CHU_2120 hypothetical protein.
 
     0.838
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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