Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dfer_2004KEGG: chu:CHU_0383 hypothetical protein. (347 aa)    
Predicted Functional Partners:
Dfer_1985
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: fps:FP2259 dehydratase.
 
  
 0.906
Dfer_1996
KEGG: fps:FP2283 hypothetical protein.
 
 
 0.882
Dfer_5802
KEGG: chu:CHU_0385 acyl carrier protein.
 
 
 0.878
Dfer_1990
KEGG: gfo:GFO_1661 acyl-carrier protein.
 
 
 0.876
Dfer_1994
KEGG: chu:CHU_2120 hypothetical protein.
 
  
 0.855
Dfer_5797
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: chu:CHU_0390 3-oxoacyl-(acyl carrier protein) synthase III.
 
  
 0.852
Dfer_2001
MCP methyltransferase, CheR-type; PFAM: phospholipid/glycerol acyltransferase; Methyltransferase type 11; MCP methyltransferase CheR- type; Methyltransferase type 12; SMART: phospholipid/glycerol acyltransferase; KEGG: bvu:BVU_1030 putative exporter.
 
 
 0.824
Dfer_1995
PFAM: lipid A biosynthesis acyltransferase; KEGG: chu:CHU_2122 acyltransferase.
 
    0.798
Dfer_1986
PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pca:Pcar_2658 hypothetical protein.
 
   
 0.797
Dfer_1991
KEGG: gfo:GFO_1662 hypothetical protein.
 
     0.795
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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