Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dfer_2012ADP-heptose:LPS heptosyltransferase-like protein; KEGG: gsu:GSU1507 heptosyltransferase family protein, putative. (357 aa)    
Predicted Functional Partners:
Dfer_4000
PFAM: PfkB domain protein; KEGG: chu:CHU_0783 D-alpha,beta-D-heptose 7- phosphate 1-kinase.
 
   
 0.745
Dfer_4553
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
   
 0.720
Dfer_5589
PFAM: glycosyl transferase family 9; KEGG: tbd:Tbd_0738 putative LPS biosynthesis related glycosyltransferase.
  
     0.710
Dfer_5595
PFAM: glycosyl transferase family 9; KEGG: nmu:Nmul_A1791 glycosyl transferase family protein.
  
     0.683
Dfer_4313
PFAM: PfkB domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sus:Acid_3556 hydrolase.
 
  
 0.641
Dfer_2622
PFAM: glycosyl transferase family 9; KEGG: chu:CHU_0080 glycosyl transferase family protein.
  
     0.636
Dfer_5106
Membrane protein-like protein; KEGG: dth:DICTH_0563 hypothetical protein.
  
     0.566
Dfer_3689
PFAM: PKD domain containing protein; SMART: PKD domain containing protein; KEGG: fps:FP2310 hypothetical protein.
  
     0.543
Dfer_2774
KEGG: sus:Acid_4389 hypothetical protein.
 
     0.521
Dfer_3839
KEGG: fjo:Fjoh_0319 hypothetical protein.
  
     0.516
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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