STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2012ADP-heptose:LPS heptosyltransferase-like protein; KEGG: gsu:GSU1507 heptosyltransferase family protein, putative. (357 aa)    
Predicted Functional Partners:
Dfer_4000
PFAM: PfkB domain protein; KEGG: chu:CHU_0783 D-alpha,beta-D-heptose 7- phosphate 1-kinase.
 
  
 0.746
Dfer_4553
rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
  
 0.722
Dfer_5589
PFAM: glycosyl transferase family 9; KEGG: tbd:Tbd_0738 putative LPS biosynthesis related glycosyltransferase.
  
     0.710
Dfer_5595
PFAM: glycosyl transferase family 9; KEGG: nmu:Nmul_A1791 glycosyl transferase family protein.
  
     0.683
Dfer_0646
KEGG: nar:Saro_3082 protein tyrosine/serine phosphatase.
  
   0.659
Dfer_4313
PFAM: PfkB domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sus:Acid_3556 hydrolase.
 
  
 0.650
Dfer_2622
PFAM: glycosyl transferase family 9; KEGG: chu:CHU_0080 glycosyl transferase family protein.
  
     0.636
Dfer_5106
Membrane protein-like protein; KEGG: dth:DICTH_0563 hypothetical protein.
  
     0.566
Dfer_3897
KEGG: chu:CHU_1370 NADH dehydrogenase I chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
   0.563
Dfer_4211
KEGG: chu:CHU_2614 NADH:ubiquinone oxidoreductase chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
   0.563
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.