STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2090KEGG: ccr:CC_2830 hypothetical protein. (543 aa)    
Predicted Functional Partners:
Dfer_2091
Hypothetical protein; KEGG: gfo:GFO_1935 conserved hypothetical protein, membrane.
       0.738
Dfer_2092
TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF1550; KEGG: gfo:GFO_1936 membrane protein containing DUF1550.
       0.737
Dfer_2093
KEGG: gfo:GFO_1937 hypothetical protein.
       0.736
Dfer_2094
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: gfo:GFO_1938 MoxR-like AAA family ATPase.
       0.691
Dfer_2095
KEGG: gfo:GFO_1939 hypothetical protein.
       0.651
Dfer_2096
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: gfo:GFO_1940 DNA gyrase modulator family protein.
       0.505
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.