STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2107KEGG: gfo:GFO_3170 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase. (374 aa)    
Predicted Functional Partners:
Dfer_2106
PFAM: homogentisate 12-dioxygenase; KEGG: fjo:Fjoh_0728 homogentisate 1,2-dioxygenase.
 
 0.997
Dfer_2109
Fumarylacetoacetase; KEGG: bcj:BCAL3183 putative hydrolase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF1969.
 
  
 0.960
Dfer_2108
PFAM: aromatic amino acid hydroxylase; KEGG: reu:Reut_A3387 phenylalanine 4-monooxygenase.
 
  
 0.945
Dfer_3724
PFAM: aminotransferase class I and II; KEGG: chu:CHU_0784 aminotransferase.
   
 
 0.913
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: chu:CHU_1269 histidinol phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.909
Dfer_2627
PFAM: aminotransferase class I and II; aminotransferase class V; KEGG: fjo:Fjoh_0217 aminotransferase, class I and II.
    
 0.909
Dfer_4274
PFAM: FAD dependent oxidoreductase; KEGG: sse:Ssed_3545 D-amino acid dehydrogenase.
   
 
 0.908
Dfer_2974
PFAM: carboxyl transferase; KEGG: gfo:GFO_0976 acyl-CoA carboxylase carboxyl transferase beta subunit.
  
  
 0.636
Dfer_3637
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: fps:FP1002 carboxyltransferase.
  
  
 0.636
Dfer_2110
PFAM: regulatory protein TetR; KEGG: chu:CHU_2862 TetR family transcriptional regulator.
     
 0.622
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.