STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2123KEGG: rba:RB3495 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Dfer_2124
Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rba:RB3493 ribose ABC transporter, periplasmic ribose-binding protein RbsB.
 
    0.944
Dfer_2122
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB3496 ribose ABC transporter, ATP- binding protein RbsA.
 
     0.863
Dfer_2128
PFAM: L-fucose isomerase-like-like; KEGG: kpn:KPN_00592 putative L-fucose isomerase, C- terminal.
 
     0.854
Dfer_2121
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: rba:RB3497 ribose transport system permease protein RbsC.
 
     0.820
Dfer_2125
PFAM: protein of unknown function DUF1593; KEGG: rba:RB3513 signal peptide.
 
     0.779
Dfer_2126
PFAM: Transketolase domain protein; Transketolase central region; KEGG: tma:TM0953 transketolase, C-terminal subunit.
 
     0.772
Dfer_2141
PFAM: Asp/Glu/hydantoin racemase; KEGG: ret:RHE_PF00355 hypothetical protein.
  
     0.637
Dfer_2127
PFAM: Transketolase domain protein; KEGG: tma:TM0954 transketolase, N-terminal subunit.
 
     0.631
Dfer_2129
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; regulatory protein ArsR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: bvu:BVU_0360 transcriptional regulator of sugar metabolism.
 
     0.629
Dfer_2136
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2413 hypothetical protein.
  
     0.578
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.