STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2131KEGG: bfr:BF4067 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Dfer_2132
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cph:Cpha266_1701 helix-turn-helix domain- containing protein.
 
 
 0.964
Dfer_3978
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_3932 helix-turn-helix domain- containing protein.
 
 
 0.884
Dfer_4425
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gur:Gura_3932 helix-turn-helix domain- containing protein.
 
 
 0.884
Dfer_5282
KEGG: gfo:GFO_0922 HTH_3 family transcriptional regulator protein.
 
 
 0.882
Dfer_5530
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: gfo:GFO_0922 HTH_3 family transcriptional regulator protein.
 
 
 0.882
Dfer_4145
KEGG: cak:Caul_4863 hypothetical protein.
  
  
  0.849
Dfer_5529
KEGG: syp:SYNPCC7002_F0023 hypothetical protein.
  
  
  0.849
Dfer_4146
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: gfo:GFO_0922 HTH_3 family transcriptional regulator protein.
 
 
 0.785
Dfer_4295
Hypothetical protein; KEGG: cph:Cpha266_1701 helix-turn-helix domain- containing protein.
  
 
 0.498
Dfer_2130
PFAM: protein of unknown function DUF1080; KEGG: smt:Smal_1044 protein of unknown function DUF1080.
       0.490
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.