STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2133PFAM: protein of unknown function DUF1680; KEGG: fjo:Fjoh_4097 hypothetical protein. (673 aa)    
Predicted Functional Partners:
Dfer_2135
KEGG: fjo:Fjoh_4089 hypothetical protein.
 
     0.856
Dfer_0638
KEGG: fjo:Fjoh_4103 hypothetical protein.
 
     0.722
Dfer_2149
KEGG: fjo:Fjoh_4082 hypothetical protein.
 
   
 0.696
Dfer_2146
KEGG: fjo:Fjoh_4099 hypothetical protein.
 
     0.683
Dfer_2134
KEGG: fjo:Fjoh_4086 hypothetical protein.
     
 0.650
Dfer_2150
KEGG: bvu:BVU_2918 hypothetical protein.
 
     0.647
Dfer_2136
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2413 hypothetical protein.
       0.639
Dfer_0637
KEGG: bfr:BF3494 hypothetical protein.
 
   
 0.628
Dfer_2147
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bth:BT_1031 hypothetical protein.
  
     0.626
Dfer_2740
PFAM: Acetyl xylan esterase; KEGG: fjo:Fjoh_4084 hypothetical protein.
  
     0.581
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.