STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2139PFAM: type III effector Hrp-dependent outers; KEGG: acr:Acry_1068 type III effector Hrp-dependent outer protein. (461 aa)    
Predicted Functional Partners:
Dfer_2138
PFAM: ribulose bisphosphate carboxylase large chain; KEGG: acr:Acry_1067 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
 
   
 0.956
Dfer_2141
PFAM: Asp/Glu/hydantoin racemase; KEGG: ret:RHE_PF00355 hypothetical protein.
 
     0.794
Dfer_2133
PFAM: protein of unknown function DUF1680; KEGG: fjo:Fjoh_4097 hypothetical protein.
 
     0.574
Dfer_0638
KEGG: fjo:Fjoh_4103 hypothetical protein.
 
     0.559
Dfer_2137
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bth:BT_0190 hypothetical protein.
 
     0.549
Dfer_2135
KEGG: fjo:Fjoh_4089 hypothetical protein.
 
     0.542
Dfer_2136
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2413 hypothetical protein.
 
     0.538
Dfer_2146
KEGG: fjo:Fjoh_4099 hypothetical protein.
 
     0.513
Dfer_2147
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bth:BT_1031 hypothetical protein.
  
     0.461
Dfer_2150
KEGG: bvu:BVU_2918 hypothetical protein.
  
     0.456
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.