STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2164PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ava:Ava_1942 ABC transporter, transmembrane region. (585 aa)    
Predicted Functional Partners:
Dfer_2648
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cpf:CPF_2223 spermidine/putrescine ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.856
Dfer_2165
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rrs:RoseRS_2719 ABC transporter related.
 
    
0.833
Dfer_0708
PFAM: ABC transporter related; KEGG: fps:FP0422 ABC transporter permease/ATPase.
  
  
0.636
Dfer_2381
PFAM: peptidase M28; KEGG: sru:SRU_2730 aminopeptidase.
    
 0.602
Dfer_2166
PFAM: sulfatase; KEGG: bfs:BF3094 putative sulfatase.
  
    0.539
Dfer_5250
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pdi:BDI_2935 ABC transporter ATP-binding protein.
 
 
  
0.494
Dfer_1690
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pdi:BDI_2935 ABC transporter ATP-binding protein.
 
 
  
0.492
Dfer_4910
PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: fjo:Fjoh_1164 ABC transporter related.
 
 
  
0.470
Dfer_0659
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cpc:Cpar_0887 AAA ATPase central domain protein.
   
 0.467
Dfer_2037
PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: chu:CHU_3794 naringenin-chalcone synthase.
   
 
 0.452
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.