STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2249KEGG: sus:Acid_0259 hypothetical protein. (295 aa)    
Predicted Functional Partners:
Dfer_1405
PFAM: Carboxylesterase type B; KEGG: sus:Acid_2085 carboxylesterase, type B; Belongs to the type-B carboxylesterase/lipase family.
   
 0.715
Dfer_0796
Endo-1,4-beta-xylanase; KEGG: dth:DICTH_1538 glycosyl hydrolase family 10; PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10.
 
     0.705
Dfer_0823
PFAM: glycoside hydrolase family 43; KEGG: bth:BT_0369 endo-1,4-beta-xylanase D precursor; Belongs to the glycosyl hydrolase 43 family.
 
     0.680
Dfer_0331
PFAM: putative esterase; glycoside hydrolase family 13 domain protein; KEGG: sus:Acid_2073 putative esterase.
 
     0.665
Dfer_0298
PFAM: putative esterase; KEGG: bth:BT_4077 endo-1,4-beta-xylanase Z precursor.
 
     0.542
Dfer_2250
PFAM: NUDIX hydrolase; KEGG: fjo:Fjoh_1570 NUDIX hydrolase.
       0.524
Dfer_3126
KEGG: sus:Acid_1749 putative acetyl xylan esterase.
  
     0.431
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.