STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2284KEGG: fjo:Fjoh_4245 hypothetical protein. (584 aa)    
Predicted Functional Partners:
Dfer_0537
KEGG: fjo:Fjoh_3952 hypothetical protein.
 
 
 
 0.788
Dfer_2283
TIGRFAM: polymorphic outer membrane protein; PFAM: Polymorphic membrane protein Chlamydia; KEGG: rrs:RoseRS_4272 hypothetical protein.
 
 
   0.772
Dfer_1844
PFAM: RagB/SusD domain protein; KEGG: bfs:BF4249 putative outer membrane protein.
  
 
   0.766
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.759
Dfer_2891
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: chu:CHU_0759 WD-40 repeat-containing protein.
   
 0.743
Dfer_5199
ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity.
   
 0.734
Dfer_1899
KEGG: ret:RHE_CH01081 hypothetical protein.
  
     0.679
Dfer_2268
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_0510 hypothetical protein.
  
 
   0.678
Dfer_1919
KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related.
  
     0.666
Dfer_0821
Hypothetical protein; KEGG: bvi:Bcep1808_1833 polymorphic outer membrane protein.
  
 
   0.652
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.