STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2301PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4254 RagB/SusD domain-containing protein. (565 aa)    
Predicted Functional Partners:
Dfer_2302
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_0135 hypothetical protein.
 
     0.943
Dfer_2300
PFAM: glycoside hydrolase family 28; KEGG: bth:BT_4155 hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
 
 
   0.805
Dfer_2262
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_0511 hypothetical protein.
 
 
   0.802
Dfer_5672
PFAM: TonB-dependent receptor plug; KEGG: bvu:BVU_0365 hypothetical protein.
 
 
   0.788
Dfer_1640
PFAM: TonB-dependent receptor plug; KEGG: bvu:BVU_0167 hypothetical protein.
  
 
   0.782
Dfer_1497
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; Secretin/TonB short domain; KEGG: bvu:BVU_1806 hypothetical protein.
 
 
   0.752
Dfer_1778
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_0190 hypothetical protein.
  
 
   0.729
Dfer_0793
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_0038 hypothetical protein.
  
     0.723
Dfer_4708
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; Secretin/TonB short domain; KEGG: fjo:Fjoh_4645 TonB-dependent receptor, plug.
  
     0.717
Dfer_2219
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_0511 hypothetical protein.
  
     0.710
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.