STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2336PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ade:Adeh_1762 two component LuxR family transcriptional regulator. (208 aa)    
Predicted Functional Partners:
Dfer_5761
KEGG: chu:CHU_2784 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein.
  
 
 0.846
Dfer_4503
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; TPR repeat-containing protein; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide domain protein; KEGG: fjo:Fjoh_0560 histidine kinase.
 
 
 0.744
Dfer_0171
KEGG: fjo:Fjoh_3925 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein.
   
 
 0.690
Dfer_1135
KEGG: chu:CHU_2080 sensor histidine kinase/response regulator fusion protein; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; GAF domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver.
 
 
 
 0.688
Dfer_2335
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sat:SYN_01953 response regulator.
 
    
0.660
Dfer_5543
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_0560 histidine kinase.
  
   0.634
Dfer_0415
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide domain protein; KEGG: gfo:GFO_2634 two-component system sensor histidine kinase.
  
   0.625
Dfer_2962
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: chu:CHU_1316 sensor histidine protein kinase.
 
   0.625
Dfer_0725
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two component regulator three Y domain protein; Two component regulator propeller; KEGG: bth:BT_4663 two-component system sensor histidine kinase/response.
 
 
 0.614
Dfer_1697
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_0560 histidine kinase.
  
   0.614
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.