STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araBTIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: scl:sce3311 ribulokinase. (554 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 0.999
Dfer_2396
PFAM: class II aldolase/adducin family protein; KEGG: fjo:Fjoh_1120 L-ribulose-5-phosphate 4- epimerase.
 
 
 0.997
Dfer_0399
Putative L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.979
Dfer_3132
PFAM: carbohydrate kinase FGGY; KEGG: sen:SACE_6529 carbohydrate kinase, FGGY.
 
 
 0.926
Dfer_2872
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_0027 xylose isomerase domain- containing protein.
  
  
  0.914
Dfer_5109
KEGG: chu:CHU_1605 ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.909
Dfer_2598
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB7382 hypothetical protein.
     
  0.900
Dfer_4874
KEGG: bfs:BF1659 putative ribose 5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.
    
  0.813
Dfer_4125
PFAM: PfkB domain protein; KEGG: pdi:BDI_3186 putative gluconate kinase.
     
 0.806
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.