STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2404PFAM: metallophosphoesterase; KEGG: bth:BT_2457 putative purple acid phosphatase. (406 aa)    
Predicted Functional Partners:
Dfer_2702
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rba:RB4127 hypothetical protein.
     0.957
Dfer_2403
PFAM: RagB/SusD domain protein; KEGG: bth:BT_0030 hypothetical protein.
 
     0.879
Dfer_2402
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; Secretin/TonB short domain; KEGG: bth:BT_0029 hypothetical protein.
 
     0.862
Dfer_2405
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pdi:BDI_3112 hypothetical protein.
 
     0.571
Dfer_2682
PFAM: lipolytic protein G-D-S-L family; KEGG: pdi:BDI_0534 putative acetylhydrolase.
  
     0.524
Dfer_1803
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1154 SusD/RagB family protein.
  
     0.518
Dfer_4496
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfs:BF0571 putative TonB-linked outer membrane receptor protein.
  
     0.502
Dfer_4497
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_1676 hypothetical protein.
  
     0.465
Dfer_1232
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_3797 hypothetical protein.
  
     0.443
Dfer_1655
KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.
  
     0.438
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.