STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2445PFAM: Endoribonuclease L-PSP; KEGG: sus:Acid_6149 endoribonuclease L-PSP. (155 aa)    
Predicted Functional Partners:
Dfer_0749
PFAM: Endoribonuclease L-PSP; KEGG: chy:CHY_2460 endoribonuclease L-PSP family protein.
  
     0.772
Dfer_2441
PFAM: amidohydrolase; KEGG: sus:Acid_6154 dihydroorotase.
 
     0.730
Dfer_2440
KEGG: sus:Acid_6148 selenocysteine synthase (seryl- tRNASer selenium transferase)-like protein.
 
     0.717
Dfer_2453
PFAM: amidohydrolase; KEGG: sus:Acid_6154 dihydroorotase.
 
     0.674
Dfer_3349
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sus:Acid_6154 dihydroorotase.
 
     0.653
Dfer_3350
PFAM: amidohydrolase; KEGG: sus:Acid_6154 dihydroorotase.
 
     0.647
Dfer_2444
KEGG: gvi:gll4002 unknown protein.
       0.645
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
    
  0.597
Dfer_0481
KEGG: sus:Acid_6148 selenocysteine synthase (seryl- tRNASer selenium transferase)-like protein.
 
     0.527
Dfer_2442
PFAM: NHL repeat containing protein; cytochrome c class I; KEGG: ote:Oter_0027 cytochrome c class I.
 
    0.489
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.