STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2551PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pdi:BDI_1213 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Dfer_2550
PFAM: conserved hypothetical protein; KEGG: bvu:BVU_2604 putative transmembrane protein.
 
  
 0.954
Dfer_2549
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pdi:BDI_1214 putative hydrolase.
  
 0.953
Dfer_0456
TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: chu:CHU_2526 competence/damage-inducible protein CinA; Belongs to the CinA family.
  
  
 0.835
Dfer_2553
KEGG: bvu:BVU_2601 putative nucleoside-diphosphate- sugar pyrophosphorylase.
 
   0.814
Dfer_2554
KEGG: pdi:BDI_1572 hypothetical protein.
 
     0.802
Dfer_2552
KEGG: pdi:BDI_1212 hypothetical protein.
       0.796
Dfer_2555
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; dihydrodipicolinate reductase; NmrA family protein; KEGG: bvu:BVU_1089 NAD-dependent epimerase.
 
   
 0.736
Dfer_2548
PFAM: PfkB domain protein; KEGG: bth:BT_3576 putative ribokinase.
 
   
 0.708
Dfer_2547
KEGG: fjo:Fjoh_3798 hypothetical protein.
 
     0.677
Dfer_5721
PFAM: protein of unknown function DUF187; KEGG: mes:Meso_4442 hypothetical protein.
  
     0.661
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.