STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2556KEGG: mxa:MXAN_3747 hypothetical protein. (373 aa)    
Predicted Functional Partners:
Dfer_2555
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; dihydrodipicolinate reductase; NmrA family protein; KEGG: bvu:BVU_1089 NAD-dependent epimerase.
 
     0.948
Dfer_2557
Glycine C-acetyltransferase; PFAM: aminotransferase class I and II; aminotransferase class-III; aromatic amino acid beta- eliminating lyase/threonine aldolase; KEGG: pgi:PG1780 8-amino-7-oxononanoate synthase.
   
 0.933
Dfer_2554
KEGG: pdi:BDI_1572 hypothetical protein.
 
     0.783
Dfer_2546
PFAM: fatty acid hydroxylase; KEGG: scl:sce3951 hypothetical protein.
 
     0.662
Dfer_2547
KEGG: fjo:Fjoh_3798 hypothetical protein.
 
     0.585
Dfer_2551
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pdi:BDI_1213 hypothetical protein.
 
     0.558
Dfer_2550
PFAM: conserved hypothetical protein; KEGG: bvu:BVU_2604 putative transmembrane protein.
 
     0.526
Dfer_2553
KEGG: bvu:BVU_2601 putative nucleoside-diphosphate- sugar pyrophosphorylase.
       0.461
Dfer_1800
KEGG: fjo:Fjoh_3798 hypothetical protein.
 
     0.445
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
      0.419
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.