STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_2575TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: chu:CHU_0978 cysteine desulfurase activator complex subunit SufB. (481 aa)    
Predicted Functional Partners:
Dfer_5778
FeS assembly ATPase SufC; KEGG: chu:CHU_0977 iron-regulated ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.999
Dfer_5780
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: chu:CHU_0975 aminotransferase class 5 protein; selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.985
Dfer_2039
TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: chu:CHU_1815 selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.963
Dfer_5784
TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: chu:CHU_0973 hypothetical protein.
   
 0.940
Dfer_3047
PFAM: aminotransferase class V; KEGG: sus:Acid_3450 aminotransferase, class V.
 
 0.828
Dfer_5783
PFAM: Fe-S metabolism associated SufE; KEGG: pdi:BDI_3546 hypothetical protein.
 
 
 0.780
Dfer_0701
PFAM: protein of unknown function DUF59; KEGG: gka:GK0753 hypothetical protein.
 
   
 0.621
Dfer_3150
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: chu:CHU_2522 scaffold protein for iron- sulphur cluster assembly; Belongs to the HesB/IscA family.
  
 
 0.554
Dfer_2576
PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; KEGG: fjo:Fjoh_5016 sodium/hydrogen exchanger.
       0.532
Dfer_5062
PFAM: HesB/YadR/YfhF-family protein; KEGG: sru:SRU_1318 iron-sulfur cluster assembly accessory protein, putative; Belongs to the HesB/IscA family.
  
 
 0.527
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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